nf-core/tools

Overview of sections about nf-core/tools

This is the overview of the nf-core-tools section.

Nf-core-tools

Installation

Installing nf-core/tools

Pipelines

Modules

Subworkflows

Test datasets

TUI

Explore the nf-core command line graphically

Custom remotes

Custom remote modules and subworkflows

API Reference

nf-core/tools API Reference

Checklists
- Pipeline release
- Reviews
- Community governance
  - Core team
  - Maintainers team
Contributing
- Pipelines
  - Pipeline file structure
- Software packaging
  - arm64 builds
- nf-test
  - Assertions
- Components
  - ext.args
  - Meta map
- Website
  - Markdown
- Code editors and styling
- Github
  - nf-core bot
- How to contribute to nf-core
- Project proposals
Guidelines
- Graphic design
- Pipelines
- Regulatory
  - Overview
  - Checklist
- Components
- Documentation
  - Writing style
- External use
- Google slides progressbar
- Pull request review
nf-core/tools
- Installation
- Pipelines
- Modules
- Subworkflows
- Test datasets
- TUI
- Custom remotes
- API Reference
Tutorials
- Devcontainer
- Use nf-core pipelines
  - Writing institutional profiles
- Adding a pipeline
- Tests and test data
- nf-core components
- Pipelines
  - Switching master to main
- Contributing to nf-core
- External usage
  - Cross organisational subworkflows
  - nf-core configs outside nf-core
- Google colab
  - nf-core colab guide
- Nextflow training
  - Creating with nf-core
  - Nextflow
- nf-core training
  - Overview
  - Contributing training
    
    nf-core contributing overview
  - Writing nf-core modules
    
    Chapter 1: Introduction
    Chapter 2: Setup
    Chapter 3: What is a module?
    Chapter 4: Boilerplate files
    Chapter 5: Writing
    Chapter 6: Testing
    Chapter 7: Dev. Workflow
    Chapter 8: Using
- Sync
Usage
- Getting started
- Troubleshooting
- Reference genomes